Inside the Grain: The Composition of Milk Kefir Bacteria

To the naked eye, they look like cauliflower florets or gummy bears. But under a microscope, a Kefir Grain is a bustling metropolis. It is one of nature’s most complex Symbiotic Cultures of Bacteria and Yeast (SCOBY).

Unlike yogurt, which usually contains just 2 or 3 strains of bacteria, Milk Kefir Grains can contain over 50 distinct species living in perfect harmony. This guide breaks down exactly what is living in your jar.


šŸ”¬ The Matrix: What is a “Kefir Grain”?

Before we list the bugs, we must understand the “house” they live in. The white, rubbery structure of the grain is not the bacteria itself; it is a protective coating called Kefiran.

  • The Architect: A specific bacteria called Lactobacillus kefiranofaciens creates this slime.
  • The Material: Kefiran is a water-soluble polysaccharide (a long chain of sugars).
  • The Function: It protects the colony from UV light, drying out, and creates a safe home for other bacteria to attach to.
Did you know?
The “Kefiran” (the grain structure) itself has anti-inflammatory properties and is unique to authentic kefir grains. Powdered starters cannot produce it.

🦠 The 3 Main Groups

A healthy grain is a battleground of three forces balancing each other out.

The GroupPrimary JobEffect on Taste
1. Lactic Acid Bacteria (LAB)

Examples: Lactobacillus kefiri, L. acidophilus

The Workers.
They eat lactose (milk sugar) and convert it into lactic acid. This thickens the milk and preserves it.
SOUR šŸ‹
Provides the yogurt-like tartness and thick creamy texture.
2. Yeasts

Examples: Saccharomyces kefir, Kluyveromyces marxianus

The Energizers.
They produce CO2 (carbonation), small amounts of alcohol, and B-Vitamins.
FIZZY šŸž
Provides the champagne-like bubbles and a slight “yeasty/bread” aroma.
3. Acetic Acid Bacteria

Examples: Acetobacter aceti

The Preservers.
They thrive in the presence of oxygen and convert alcohol into acetic acid (vinegar).
TANGY šŸ§‚
Provides the sharp “bite” that distinguishes kefir from mild yogurt.

šŸŒ No Two Kefir Grains are Alike

This is why homemade kefir is superior to store-bought.

The “Terroir” of Kefir:
Just like wine grapes change based on the soil, your kefir grains change based on your environment.
The bacterial composition of milk kefir grains in a winter kitchen in Belgium will be biologically different from grains in a summer kitchen in Spain.

Adaptive Probiotics:
Because the microbial mix is constantly evolving, it creates a robust ecosystem that is much harder for bad bacteria (pathogens) to invade. A powdered starter is static; a grain is smart.

🧬 Notable Species List

While the list changes, these are the “Celebrity” microbes found in almost all authentic grains:

  • Lactobacillus kefiri: Found only in kefir grains. Known for killing aggressive pathogens like Salmonella and E. Coli.
  • Lactobacillus parakefiri: A strong probiotic supporter.
  • Saccharomyces cerevisiae: The same family as brewers yeast, responsible for the vitamin B boost.
  • Leuconostoc mesenteroides: Produces dextran, helping build the grain’s body.

Yeasty vs. Bacterial Balance

You can manipulate this balance!

  • šŸ”„ Warm Temps (25°C+): Favors Bacteria (Thick, very sour, fast separation).
  • ā„ļø Cool Temps (18°C): Favors Yeast (Thinner, fizzy, milder sourness).

If your kefir is too yeasty, ferment it in a warmer spot for a few batches.


ā“ Composition FAQs

Are there bad bacteria in the grains?

In healthy kefir grains, no. The Lactobacillus produce so much acid and antimicrobial compounds (bacteriocins) that pathogens like Salmonella cannot survive in the jar. The ecosystem protects itself.

Why does my kefir taste different than my friend’s?

Because your microbial map is different! The ratio of Yeast to Bacteria varies based on your milk type, temperature, and even the natural wild yeasts in your kitchen air.

Can I see the bacteria?

Not with the naked eye. You would need a high-powered microscope (1000x magnification) to see the individual rods (lactobacillus) and spheres (yeast).

Do powdered starters have the same composition?

No. Powdered starters are lab-created blends of 5-7 specific strains. They lack the complex biodiversity and the physical kefiran matrix of live grains, which is why they die after a few uses.

Does the composition change if I use Goat Milk?

Yes. Over time, the bacterial population will adapt to digest the specific proteins and fats in goat milk. However, the core structure (Kefiran) remains similar.

Which bacteria helps with Lactose Intolerance?

The entire LAB (Lactic Acid Bacteria) group helps. They feed on lactose. Additionally, they produce the enzyme beta-galactosidase (lactase), which stays active in the kefir and helps you digest any remaining lactose in your gut.